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C++ Programming

DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.

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DNA String compression example

 

Definition:

A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.

Assume the following binary encoding: A = 00, T= 01, C = 10, G = 11

 

We can fit 4 characters from a DNA string into an unsigned char.If (|d| % 4 != 0), then pad with trailing zeros.  Suppose d is ATTCGG.

Compress ATTCGG using bitwise operators in C++. First print |d|.

DNA String compression example

 

Definition:    

A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0.   |d| is the length of d.

Assume the following binary encoding:

A = 00, T= 01, C = 10, G = 11

d = ATTCGG

Initialize an 8-bit unsigned char to store compressed bits.

DNA String compression example

 

Definition: 

 A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0.  |d| is the length of d.

Assume the following binary encoding:

A = 00, T= 01, C = 10, G = 11

d = ATTCGG

Read the first character of d and use bitwise operators to place its binary encoding in the proper location.

DNA String compression example

 

Definition: A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0.  |d| is the length of d.

Assume the following binary encoding:

A = 00, T= 01, C = 10, G = 11

d = ATTCGG

Read the next character of d and use bitwise operators to place its binary encoding in the proper location.

DNA String compression example

 

Definition:  

  A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0 |d| is the length of d.

Assume the following binary encoding:

A = 00, T= 01, C = 10, G = 11

d = ATTCGG

Read the next character of d and use bitwise operators to place its binary encoding in the proper location.

DNA String compression example

 

Definition: 

A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.

Assme the following binary encoding:

A = 00, T= 01, C = 10, G = 11

d = ATTCGG

Read the next character of d and use bitwise operators to place its binary encoding in the proper location.

 

DNA String compression example

Definition: A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0.

  |d| is the length of d.

Assume the following binary encoding:

A = 00, T= 01, C = 10, G = 11

d = ATTCGG

Print the base-10 integer value of the 8-bit unsigned char.

 

DNA String compression example

 

Definition:  A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0. |d| is the length of d.

Assume the following binary encoding:

A = 00, T= 01, C = 10, G = 11

d = ATTCGG

Reinitialize the 8-bit unsigned char.

DNA String compression example

 

Definition:         

A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0 |d| is the length of d.

 

Assume the following binary encoding:

A = 00, T= 01, C = 10, G = 11

d = ATTCGG

 

Read the next character of d and use bitwise operators to place its binary encoding in the proper location.

DNA String compression example

 

Definition:         

A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0.   |d| is the length of d.

 

Assume the following binary encoding:

A = 00, T= 01, C = 10, G = 11

d = ATTCGG

 Read the next character of d and use bitwise operators to place its binary encoding in the proper location.

 

DNA String compression example

 

Definition:  A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0.     |d| is the length of d.

Assume the following binary encoding:

A = 00, T= 01, C = 10, G = 11

d = ATTCGG

Once we reach the end of d, add trailing zeros to fill the 8-bit

unsigned char.

DNA String compression example

 

Definition:A DNA string d is string of consisting of characters from the set {A, T, C, G} where |d| > 0.    |d| is the length of d.

 

Assume the following binary encoding:

A = 00, T= 01, C = 10, G = 11

d = ATTCGG

Print the base-10 integer value of the 8-bit unsigned char

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